Pybus OG, Rambaut. A. 2002. GENIE: Estimating demographic history from molecular phylogenies. Bioinformatics 18:1404-5 (pdf)

Strimmer K, Pybus OG. 2001. Exploring the demographic history of DNA sequences using the generalised skyline plot. Molecular Biology & Evolution 18:2298-305

Pybus OG, Rambaut A, Harvey PH. 2000. An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155:1429-37

Authors: Oliver Pybus & Andrew Rambaut

Latest version: 3.0

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Genie (Genealogy Interval Explorer) is a program for the inference of demographic history from reconstructed molecular phylogenies. It is primarily designed for the analysis of phylogenies reconstructed from highly variable viral gene sequences, but can be applied to other types of sequence data that contains a significant amount of phylogenetic information.