Authors: Samir Bhatt and Oliver Pybus

Latest version: 1.0

Download program & manual (Adapt-A-Rate v1.0.zip)

This program estimates the rate of adaptive fixation in a population from sequences sampled at different points in time. It uses a population genetic method that is based on the MacDonald-Kreitman test. See the publication below for details.

Bhatt S, Holmes EC, Pybus OG (2011) The genomic rate of molecular adaptation of the human influenza A virus. Molecular Biology & Evolution 28:2443-51